AID-ISA extracts biologically relevant biclusters from microarray gene expression data by leveraging additional knowledge. It is available here.
CDoT is a novel exact algorithm for answering Maximum a Posteriori queries on tree-structured Probabilistic Graphical Models (♰).
famCNV (v2.0) enables genome-wide association of copy number variants with quantitative phenotypes in families. It is available here.
GOClust performs a coclustering of microarray gene expression data by means of Gene Ontology-derived constraints (♰).
MAP is a proof-of-concept not production-ready pipeline for the analysis of metagenomic data. It can be downloaded from here.
MotifsLinker associates clusters of proteins with their frequent motifs (♰).
PicNic extracts topologies and discovers patterns in sets of chemical compound.
PopPAnTe enables pairwise association testing in related samples. It can be downloaded from here.
RGO (Restructured Gene Ontology) is a reorganisation of the Gene Ontology that emphasises regulative information so to provide better structure for gene functional analysis (♰).
SPOT performs an exhaustive search of frequent motifs in sets of biological sequences (♰).
YAMP is a containerised and reproducible pipeline which allows processing raw metagenomic sequencing data up to the functional annotation. It can be downloaded from here.
(♰) Tools hosted by the department of Computer Science, University of Turin, are no longer available on-line. Please contact me for more information.